Author

Andrew L. Soborowski

Duke University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Amy SchmidiD· 2 shared Julie Anne Maupin-furlowiD· 2 shared Alexandre W. Bisson FilhoiD· 1 shared Anita MarchfelderiD· 1 shared Charles J. Daniels· 1 shared Guangyin ZhouiD· 1 shared Keely Dulmage· 1 shared Mar Martínez-PastoriD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

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10 top collaborators · 33 mutual co-author links

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2 shared papersSystems Biology

Amy SchmidORCID

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2 papers

Recent·Most cited

A Bayesian Multi-Species Approach Infers Gene Regulatory Networks Across Non-Model Organisms

Andrew L. Soborowski, Ömür Kayıkçı, Mar Martínez-Pastor, Julie Anne Maupin-furlow, William H. Majoros, Amy Schmid

This paper introduces GRN-BMuSeR, a Bayesian multi-species method for gene regulatory network inference, showing improved performance in bacteria and novel predictions in archaea.

bioRxiv · Aug 28, 2026 · PreprintSystems Biology

Genomic re-sequencing reveals substantial mutational divergence across genetically engineered strains of model archaea

Andrew L. Soborowski, Rylee K. Hackley, Sungmin Hwang, Guangyin Zhou, Keely Dulmage, Peter Schönheit, Charles J. Daniels, Alexandre W. Bisson Filho, Anita Marchfelder, Julie Anne Maupin-furlow, Thorsten Allers, Amy Schmid

The paper re-sequences 60 archaeal strains from two species to assess genetic divergence and identify mutations arising from lab manipulations and transfers.

mSystems · Jan 10, 2025Peer-reviewedGenomics