Author

Mar Martínez-Pastor

Duke UniversityORCID 0000-0002-3463-4381Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:bacteria (other)· 1 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Amy SchmidiD· 3 shared Andrew L. Soborowski· 1 shared Angie Vreugdenhil· 1 shared Cynthia L. DarnelliD· 1 shared Deyra N. Rodríguez· 1 shared Julie Anne Maupin-furlowiD· 1 shared Ömür KayıkçıiD· 1 shared Saaz SakrikariD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

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3 shared papersSystems Biology

Amy SchmidORCID

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Author profile →

3 papers

Recent·Most cited

A Bayesian Multi-Species Approach Infers Gene Regulatory Networks Across Non-Model Organisms

Andrew L. Soborowski, Ömür Kayıkçı, Mar Martínez-Pastor, Julie Anne Maupin-furlow, William H. Majoros, Amy Schmid

This paper introduces GRN-BMuSeR, a Bayesian multi-species method for gene regulatory network inference, showing improved performance in bacteria and novel predictions in archaea.

bioRxiv · Aug 28, 2026 · PreprintSystems Biology

Rapid rewiring of an archaeal transcription factor function via flexible cis-trans interactions

Mar Martínez-Pastor, Cynthia L. Darnell, Angie Vreugdenhil, Amy Schmid

The paper shows that the archaeal transcription factor RosR has divergent functions across species despite strong sequence conservation, likely due to flexible cis-trans interactions.

Molecular Biology of the Cell · May 21, 2025Peer-reviewedMicrobiology

Comparative Analysis of rRNA removal methods for RNA-seq Differential Expression in Halophilic Archaea

Mar Martínez-Pastor, Saaz Sakrikar, Deyra N. Rodríguez, Amy Schmid

This paper compares rRNA removal methods for RNA-seq in halophilic archaea, finding that probe-specificity is critical for effective rRNA depletion and improved transcript detection.

bioRxiv · Apr 15, 2022 · PreprintGenomics