Author

Anthony T Papenfuss

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:genome assembly· 1 Organism:human· 1 Organism:mouse· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

David Gardner· 1 shared David W Walker· 1 shared Hayley DickinsoniD· 1 shared Jan Schroeder· 1 shared Jared MamrotiD· 1 shared Paul Medvedev· 1 shared Peter Temple-Smith· 1 shared Roxane Legaie· 1 shared

Activity by Year

2015-2017 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

David Gardner

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2 papers

Recent·Most cited

BioinformaticsScientific ReportsPeer-reviewedAug 21, 2017

De novo transcriptome assembly for the spiny mouse (Acomys cahirinus)

Jared Mamrot, Roxane Legaie, Stacey J Ellery…·Hayley Dickinson

This paper generates a reference transcriptome for the spiny mouse using Illumina RNA sequencing and validates the EvidentialGene tr2aacds pipeline for de novo assembly.

DOI 10.1038/s41598-017-09334-7

mousebulk RNA-seq

𝕏 PostBluesky

BioinformaticsPLOS ONEPeer-reviewedAug 31, 2015

Improving the Power of Structural Variation Detection by Augmenting the Reference

Jan Schroeder, Santhosh Girirajan, Anthony T Papenfuss, Paul Medvedev

This paper improves structural variation detection by using a separate alignment reference instead of the standard human genome reference, enhancing accuracy and reducing costs.

DOI 10.1371/journal.pone.0136771

humanwhole-genome sequencing

𝕏 PostBluesky