Author

Apoorva Ganesh

Institute of Bioinformatics and Applied Biotechnology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:whole-genome sequencing· 4 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:plant (other)· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Subhashini SrinivasaniD· 3 shared Aditi Thakare· 2 shared Aditya SharmaiD· 2 shared Bibha ChoudharyiD· 2 shared Febina RavindraniD· 2 shared Aadhya Jaisimha· 1 shared Anisha Mhatre· 1 shared Aritra Chattopadhyay· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Subhashini SrinivasanORCID

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4 papers

Recent·Most cited

The Chromosome-Scale Genome of Phyllanthus niruri Reveals Candidate Genes and a Putative Biosynthetic Framework for Phyllanthin Formation.

Kumari Khushi, Apoorva Ganesh, Aditya Sharma, Febina Ravindran, Subhashini Srinivasan, Bibha Choudhary

This paper presents the chromosome-scale genome of Phyllanthus niruri, identifies candidate genes, and proposes a biosynthetic pathway for phyllanthin formation.

bioRxiv · May 16, 2026 · PreprintGenomics

Benchmarking Framework to Catalyze Individual Human Genome Projects

Manjushri Kalpande, Apoorva Ganesh, Subhashini Srinivasan

This study benchmarks genome assembly quality at varying coverage levels using PacBio HiFi reads, showing high-quality assemblies achievable at 12x coverage with metrics saturating at 6x.

bioRxiv · Nov 12, 2025 · PreprintBioinformatics

The first assembled chromosome-level genome of an individual from Karnataka, India

Anisha Mhatre, Yash Chindarkar, Apoorva Ganesh, Aditi Thakare, Prakruti Mishra, Febina Ravindran, Aditya Sharma, Subhashini Srinivasan, Bibha Choudhary

The paper presents the first chromosome-level genome assembly of an individual from Karnataka, India, and compares it to other genomes to identify genetic variations and ethnic relationships.

bioRxiv · Aug 18, 2024 · PreprintGenomics

Identification of a TNF-TNFR-like system in malaria vectors (Anopheles stephensi) likely to influence Plasmodium resistance

Subhashini Srinivasan, Chaitali Ghosh, Shrestha Das, Aditi Thakare, Siddharth Singh, Apoorva Ganesh, Harsh Mahawar, Aadhya Jaisimha, Mohanapriya Krishna, Aritra Chattopadhyay, Rishima Borah, Vikrant Singh, Soumya M, Naveen Kumar, Sampath Kumar, , Suresh Ellappa Subramani

The paper identifies a TNF-TNFR-like signaling system in Anopheles stephensi mosquitoes, suggesting a role in Plasmodium resistance, and finds structural disruptions in this system in high-vectorial-capacity strains.

Scientific Reports · Nov 9, 2022Peer-reviewedGenomics