Author

Artur Gynter

University of Helsinki

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Assay:protein sequence· 1

Frequent Co-Authors

Alexandru Ioan TomescuiD· 1 shared Andreas GrigorjewiD· 1 shared Benjamin BuchfinkiD· 1 shared Dimitri MeistermanniD· 1 shared Fernando H. C. DiasiD· 1 shared Hajk‐Georg DrostiD· 1 shared Harri J LähdesmäkiiD· 1 shared Helena KilpineniD· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 13 mutual co-author links

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1 shared paperBioinformatics

Alexandru Ioan TomescuORCID

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2 papers

Recent·Most cited

DeconV: Probabilistic Cell Type Deconvolution from Bulk RNA-sequencing Data

Artur Gynter, Dimitri Meistermann, Harri J Lähdesmäki, Helena Kilpinen

DeconV is a probabilistic cell-type deconvolution method for bulk RNA-Seq data using scRNA-Seq references, offering comparable accuracy to Scaden with added interpretability through confidence intervals.

bioRxiv · Dec 7, 2023 · PreprintBioinformatics

Sensitive inference of alignment-safe intervalsfrom biodiverse protein sequence clusters usingEMERALD

Andreas Grigorjew, Artur Gynter, Fernando H. C. Dias, Benjamin Buchfink, Hajk‐Georg Drost, Alexandru Ioan Tomescu

The paper introduces EMERALD, a tool to infer alignment-safe intervals from protein sequence clusters, enhancing the analysis of biodiversity at a tree-of-life scale.

Genome biology · Jul 17, 2023Peer-reviewedBioinformatics