Hajk‐Georg Drost

The paper introduces a simulator for accurately modeling gene regulatory dynamics across large-scale eukaryotic gene sets using a biophysical chemical master equation.

The paper introduces DIAMOND DeepClust, a fast clustering method for protein sequences, identifying 1.7 billion clusters across 19 billion sequences.

This study shows that gene expression patterns in flowering plants evolve rapidly, with divergence rates exceeding those in mammals, and highlights differences in conservation across organs.

The paper analyzes NLR gene diversity in Arabidopsis thaliana using pangenomic methods to show that multiple mutational processes contribute to NLR variation without a single metric capturing all diversity.

The paper investigates the presence of a molecular hourglass pattern in brown algae, finding it in developmentally complex species but not in simpler ones.

The paper re-annotates seven plant genomes using RNA-Seq data to identify new lncRNAs and circRNAs, providing a reference for studying plant organ evolution and transcript patterns.

The paper introduces EMERALD, a tool to infer alignment-safe intervals from protein sequence clusters, enhancing the analysis of biodiversity at a tree-of-life scale.

The paper examines transposon dynamics in Thlaspi arvense, identifying TE polymorphisms linked to genetic diversity and adaptation across populations.

noisyR reduces technical noise in sequencing data to enhance biological signal detection and improve downstream analysis consistency.

The paper introduces a protocol for phylotranscriptomic analysis to detect evolutionary constraints on biological processes across species.