Genome-wide epistasis and co-selection study using mutual information
Johan Pensar, Santeri Puranen, Brian Arnold, Neil MacAlasdair, Juri Kuronen, Gerry Q. Tonkin‐Hill, Maiju Pesonen, Yingying Xu, Aleksi Sipola, Leonor Sánchez-Busó, John A. Lees, Claire Chewapreecha, Stephen D. Bentley, Simon R. Harris, Julian Parkhill, , Jukka Corander
This paper introduces SpydrPick, a model-free method to detect co-selection and epistasis in bacterial genomes, revealing both known and novel targets in human pathogens.
Nucleic Acids Research · Jul 24, 2019Peer-reviewedGenomics