Author

Aleksi Sipola

University of HelsinkiORCID 0000-0003-4623-0410Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:GWAS / association mapping· 1 Approach:simulation· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Jukka CoranderiD· 2 shared Brian Arnold· 1 shared Claire ChewapreechaiD· 1 shared Gerry Q. Tonkin‐HilliD· 1 shared Johan PensariD· 1 shared John A. LeesiD· 1 shared Julian ParkhilliD· 1 shared Juri KuroneniD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Jukka CoranderORCID

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2 papers

Recent·Most cited

GenomicsNucleic Acids ResearchPeer-reviewedJul 24, 2019

Genome-wide epistasis and co-selection study using mutual information

Johan Pensar, Santeri Puranen, Brian Arnold…·Jukka Corander

This paper introduces SpydrPick, a model-free method to detect co-selection and epistasis in bacterial genomes, revealing both known and novel targets in human pathogens.

54 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsBioinformaticsPeer-reviewedFeb 20, 2018

Bacmeta: simulation for genomic evolution in bacterial metapopulations

Aleksi Sipola, Pekka Marttinen, Jukka Corander

Bacmeta simulates genomic evolution in bacterial metapopulations with adjustable connectivity and stochastic events, enabling large-scale simulations and likelihood-free inference.

14 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky