Author

C. Koedooder

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Research Focus:ecology & biodiversity· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

F. Zhang· 2 shared S. Basu· 2 shared S. Wang· 2 shared Y. Shaked· 2 shared A. Abu Hamoud· 1 shared C. D. Nicora· 1 shared D. Sade· 1 shared D. Sher· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersMicrobiology

F. Zhang

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Author profile →

3 papers

Recent·Most cited

Collaborative metabolic curation of an emerging model marine bacterium, Alteromonas macleodii ATCC 27126

D. Sher, E. E. George, M. Wietz, S. M. Gifford, L. Zoccaratto, O. Weissberg, C. Koedooder, W. B. VK, M. Malisano Barreto Filho, R. Mireles, S. Malavin, M. Liddor-Naim, T. Idan, V. Shrivastava, L. Itelson, , L. D. Moore

The paper describes a collaborative curation workshop to improve the metabolic reconstruction of Alteromonas macleodii ATCC 27126 using genomic and physiological data, identifying key metabolic pathways and gaps.

bioRxiv · Dec 13, 2023 · PreprintMicrobiology

Taxonomic distribution of metabolic functions underpins nutrient cycling in Trichodesmium consortia

C. Koedooder, F. Zhang, S. Wang, S. T. Haley, N. Tolic, C. D. Nicora, T. Glavina del Rio, S. Basu, M. Gledhill, R. Boiteau, S. Dyhrman, M. Rubin-Blum, Y. Shaked

The study links microbial taxa and their functional traits to nutrient cycling in Trichodesmium consortia, revealing functional redundancy and interdependencies that enhance resilience in oligotrophic environments.

bioRxiv · Mar 15, 2023 · PreprintMicrobiology

Metagenomes of Red Sea subpopulations challenge the use of morphology and marker genes to assess Trichodesmium diversity

C. Koedooder, E. Landou, F. Zhang, S. Wang, S. Basu, I. Berman-Frank, Y. Shaked, M. Rubin Blum

The paper assesses Trichodesmium diversity in the Red Sea using metagenomes and hetR gene phylotyping, finding that morphology and marker genes may not reliably reflect genetic diversity.

bioRxiv · Feb 13, 2022Microbiology