Author

Y. Shaked

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:cancer & tumor microenvironment· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

C. Koedooder· 2 shared F. Zhang· 2 shared S. Basu· 2 shared S. Wang· 2 shared Z. Raviv· 2 shared B. James· 1 shared C. Carrere· 1 shared C. D. Nicora· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersMicrobiology

C. Koedooder

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Taxonomic distribution of metabolic functions underpins nutrient cycling in Trichodesmium consortia

C. Koedooder, F. Zhang, S. Wang, S. T. Haley, N. Tolic, C. D. Nicora, T. Glavina del Rio, S. Basu, M. Gledhill, R. Boiteau, S. Dyhrman, M. Rubin-Blum, Y. Shaked

The study links microbial taxa and their functional traits to nutrient cycling in Trichodesmium consortia, revealing functional redundancy and interdependencies that enhance resilience in oligotrophic environments.

bioRxiv · Mar 15, 2023 · PreprintMicrobiology

Metagenomes of Red Sea subpopulations challenge the use of morphology and marker genes to assess Trichodesmium diversity

C. Koedooder, E. Landou, F. Zhang, S. Wang, S. Basu, I. Berman-Frank, Y. Shaked, M. Rubin Blum

The paper assesses Trichodesmium diversity in the Red Sea using metagenomes and hetR gene phylotyping, finding that morphology and marker genes may not reliably reflect genetic diversity.

bioRxiv · Feb 13, 2022Microbiology

Metronomic therapy prevents emergence of drug resistance by maintaining the dynamic of intratumor heterogeneity.

M. Bondarenko, M. Le Grand, Y. Shaked, Z. Raviv, G. Chapuisat, C. Carrere, M.-P. Montero, M. Rossi, E. Pasquier, M. Carre, N. Andre

This study shows metronomic therapy better controls tumor heterogeneity than maximum-tolerated dose by leveraging drug-sensitive clones' suppressive effect on resistant ones through paracrine mechanisms.

bioRxiv · Jan 4, 2021 · PreprintCancer Biology

Tumor-educated monocyte-dendritic progenitors promote a metastatic switch

K. Magidey-Klein, K. Klever, T. J. Cooper, R. Normand, T. Zhang, M. Timaner, Z. Raviv, B. James, R. Gazit, Z. A. Ronai, S. S. Shen-Orr, Y. Shaked

The paper shows that metastatic tumors drive HSPCs to differentiate into monocyte-dendritic progenitors via IL-6, promoting metastasis.

bioRxiv · Aug 25, 2020 · PreprintCancer Biology