C. Pradal

PhenoTrack3D: an automatic high-throughput phenotyping pipeline to track maize organs over time

PhenoTrack3D tracks maize organ development over time using 3D+t reconstruction from images, validated on a large dataset with high accuracy.

High-throughput and automatic structural and developmental root phenotyping on Arabidopsis seedlings

This paper introduces a high-throughput phenotyping method for Arabidopsis root systems, accurately measuring static and dynamic root architecture parameters.

Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping

Phenomenal provides an open-source library for automated 3D shoot architecture reconstruction and analysis from plant images across species and datasets.

HydroShoot: a functional-structural plant model for simulating hydraulic structure, gas and energy exchange dynamics of complex plant canopies under water deficit - application to grapevine (Vitis vinifera L.)

HydroShoot simulates canopy gas-exchange under water deficit by integrating shoot hydraulic structure and leaf energy budget, showing hydraulic structure is more critical for scaling leaf to canopy gas-exchange rates.

MuSCA: a multi-scale model to explore carbon allocation in plants

MuSCA evaluates how different spatial scales affect carbon allocation simulations in apple trees, showing significant differences in results and computation time.

Morphological plant modeling: Unleashing geometric and topological potential within the plant sciences

This paper discusses the importance of mathematical modeling in plant morphology and outlines challenges and opportunities for integrating geometric and topological approaches in plant science research and education.