Author

Carlos Lijeron

Hunter College

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Approach:experimental assay· 2 Research Focus:software / tool· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:human· 1

Frequent Co-Authors

Baekdoo Kim· 3 shared Konstantinos KrampisiD· 3 shared Thahmina A. AliiD· 3 shared Bobby P. LaunganiiD· 2 shared Changsu Dong· 2 shared Claudia WultschiD· 1 shared Enis AfganiD· 1 shared Hao CheniD· 1 shared

Activity by Year

2017-2017 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersBioinformatics

Baekdoo Kim

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3 papers

Recent·Most cited

miCloud: a plug and play, on-premises bioinformatics cloud, providing seamless integration with Illumina genome sequencers

Baekdoo Kim, Thahmina A. Ali, Konstantinos Krampis, Changsu Dong, Bobby P. Laungani, Claudia Wultsch, Carlos Lijeron

miCloud provides an on-premises bioinformatics cloud solution for Illumina sequencers, offering cost-effective and user-friendly data analysis without relying on commercial cloud services.

bioRxiv · Oct 27, 2017 · PreprintBioinformatics

Bio-Docklets: Virtualization Containers for Single-Step Execution of NGS Pipelines.

Baekdoo Kim, Thahmina A. Ali, Carlos Lijeron, Enis Afgan, Konstantinos Krampis

The paper introduces Bio-Docklets, Docker containers that simplify NGS pipeline execution by abstracting complex workflows into single-step tools.

GigaScience · Jun 27, 2017Peer-reviewedBioinformatics

Fast functional annotation of metagenomic shotgun data by DNA alignment to a microbial gene catalog

Stuart M. Brown, Yuhan Hao, Hao Chen, Bobby P. Laungani, Thahmina A. Ali, Changsu Dong, Carlos Lijeron, Baekdoo Kim, Konstantinos Krampis, Zhiheng Pei

The paper introduces a fast method for functional annotation of metagenomic shotgun data using DNA-DNA alignment to a microbial gene catalog, enabling efficient detection of differentially abundant gene functions.

bioRxiv · Mar 25, 2017 · PreprintBioinformatics