Author

Zhiheng Pei

NYU Langone HealthORCID 0000-0001-8570-6747Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Stuart M. BrowniD· 2 shared Yuhan HaoiD· 2 shared Antonio Galvao NetoiD· 1 shared Baekdoo Kim· 1 shared Bobby P. LaunganiiD· 1 shared Carlos Lijeron· 1 shared Changsu Dong· 1 shared Dervla KellyiD· 1 shared

Activity by Year

2017-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Stuart M. BrownORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

HPViewer: Sensitive and specific genotyping of human papillomavirus in metagenomic DNA

Yuhan Hao, Liying Yang, Antonio Galvao Neto, Milan R. Amin, Dervla Kelly, Stuart M. Brown, Ryan C. Branski, Zhiheng Pei

HPViewer detects HPV types in metagenomic data with high sensitivity and specificity by masking shared sequences and using short reads instead of assembled contigs.

Bioinformatics · Jan 25, 2018Peer-reviewedBioinformatics

Fast functional annotation of metagenomic shotgun data by DNA alignment to a microbial gene catalog

Stuart M. Brown, Yuhan Hao, Hao Chen, Bobby P. Laungani, Thahmina A. Ali, Changsu Dong, Carlos Lijeron, Baekdoo Kim, Konstantinos Krampis, Zhiheng Pei

The paper introduces a fast method for functional annotation of metagenomic shotgun data using DNA-DNA alignment to a microbial gene catalog, enabling efficient detection of differentially abundant gene functions.

bioRxiv · Mar 25, 2017 · PreprintBioinformatics