Author

Casandra Washington Philipson

Ginkgo Bioworks, Inc. (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:Bayesian inference· 1 Approach:experimental assay· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:software / tool· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alex M. PlocikiD· 1 shared Andrew P. RothsteiniD· 1 shared Bernadette Lu· 1 shared Birgitte B. SimeniD· 1 shared Brian SouzaiD· 1 shared Carol L. Ecale Zhou· 1 shared Gabi Muir· 1 shared Jeffrey A. KimbreliD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Alex M. PlocikORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 8, 2023

Bayesian phylogenetics on globally emerging SARS-CoV-2 variant BA.2.86 suggest global distribution and rapid evolution

Andrew P. Rothstein, Xueting Qiu, Keith E. Robison…·Casandra Washington Philipson

The paper analyzes SARS-CoV-2 variant BA.2.86 genomes to estimate its emergence date and spread using Bayesian phylogenetics and bioinformatics methods.

4 citations

viruswhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedMay 3, 2019

multiPhATE: bioinformatics pipeline for functional annotation of phage isolates

Carol L. Ecale Zhou, Stephanie Malfatti, Jeffrey A. Kimbrel…·Brian Souza

multiPhATE is a pipeline for annotating phage genomes, demonstrating its use on Yersinia pestis phage genomes and providing open-source tools for scalable phage annotation.

46 citationstop 4%

experimental assaysoftware / tool

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