Author

Charmaine Bishop

University of Bath

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Mark VineyiD· 2 shared Vicky L. HuntiD· 2 shared Ajay Elamaran· 1 shared Andrea J. BetancourtiD· 1 shared Banchob SripaiD· 1 shared Georgia Keeling· 1 shared Jane L. YoungeriD· 1 shared Katie O’BrieniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersMolecular Biology

Mark VineyORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Hunting for Helminths: short- and long-read shotgun metagenomics for parasite detection in faecal samples

Katie O’Brien, Ajay Elamaran, Mehmet Dayı, Georgia Keeling, William Nevin, Yuchen Liu, Mark Viney, Kieran Reynolds, Charmaine Bishop, Banchob Sripa, Menebere Woubshete, Pâmela Sachs Nique, Rhiannon Wright, Jane L. Younger, Vicky L. Hunt

This study validates shotgun metagenomics for detecting soil-transmitted helminths in faecal samples, finding mitochondrial sequence mapping as the most accurate method, with short-read sequencing outperforming long-read.

bioRxiv · Mar 10, 2026 · PreprintMolecular Biology

The efficacy and accuracy of ribosomal RNA depletion methods

Mohammed Ismail Ahmed, Charmaine Bishop, Andrea J. Betancourt, Vicky L. Hunt, Mark Viney

This study evaluates three rRNA depletion kits for their performance in parasitic nematodes, finding Zymo-Seq most effective with minimal bias.

bioRxiv · Jul 23, 2025 · PreprintGenomics