Author

Chunyang Ni

Stanford MedicinePrimary ORCID profile (0000-0002-6364-604X · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Chunyang NiiD1 paper · The University of Texas Southwestern Medical Center

Biology Disciplines

Click to filter author papers

Genetics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Joanna WysockaiD· 2 shared Lucia IchinoiD· 2 shared Tomek SwigutiD· 2 shared Andrew B. StergachisiD· 1 shared Benjamin J. MalloryiD· 1 shared Devaraja Gouda Mudeppa· 1 shared Jaaved MohammediD· 1 shared Kaelan BrennaniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMolecular Biology

Joanna WysockaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Enhancer Tuning by Sequence-Specific Repressors

Lucia Ichino, Kaelan Brennan, Benjamin J. Mallory, Tomek Swigut, Stephanie C. Bohaczuk, Jaaved Mohammed, Devaraja Gouda Mudeppa, Saman Tabatabaee, Chunyang Ni, Andrew B. Stergachis, Joanna Wysocka

This study shows that SNAI1 and SNAI2 repressors tune enhancer activity by shifting chromatin states, affecting enhancer function and evolution.

bioRxiv · Sep 14, 2026 · PreprintMolecular Biology

Enhancer buffering protects dosage-sensitive housekeeping genes during vulnerable developmental transitions

Chunyang Ni, Lucia Ichino, Tomek Swigut, Joanna Wysocka

TCOF1 dosage is limiting for transitional human neural crest cells; its enhancers buffer promoter output against MYC fluctuations rather than amplifying it, a pattern seen across 14 dosage-sensitive promoters.

bioRxiv · Aug 31, 2026 · PreprintGenetics✦ In-depth digest