EmbSAM: Cell boundary localization and Segment Anything Model for fast images of developing embryos
Cunmin Zhao, Zelin Li, Pei Zhang, Yixuan Chen, Pohao Ye, Ming‐Kin Wong, Lu-Yan Chan, Hong Yan, Chao Tang, Guoye Guan, Zhongying Zhao
EmbSAM provides a framework for 3D cell membrane segmentation in C. elegans embryos using deep learning and the Segment Anything Model, enabling analysis of cell shape dynamics during development.
bioRxiv · Sep 7, 2024 · PreprintBioinformatics