Author

Cynthia Rose

Salk Institute for Biological Studies

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:scRNA-seq· 3 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Assay:scATAC-seq· 2

Frequent Co-Authors

Aleksandra Bikkina· 3 shared Amit KleiniD· 3 shared Ariana S. BarcomaiD· 3 shared Bing ReniD· 3 shared Carissa K. Young· 3 shared Carolyn O’ConnoriD· 3 shared Cesar BarraganiD· 3 shared Jackson K. Willier· 3 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Aleksandra Bikkina

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Author profile →

3 papers

Recent·Most cited

A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia

Wubin Ding, Amit Klein, Cindy Tatiana Báez-Becerra, Jonathan A. Rink, Anna Bartlett, Ruoxuan Wang, Qiurui Zeng, Rosa Castanon, Joseph R. Nery, Emma Osgood, William S. Owens, Alaina Petrella, Chumo Chen, Andrea Saldana Acerbo, Ariana S. Barcoma, , Joseph R. Ecker

This paper creates a multimodal single-cell atlas of the human basal ganglia, revealing epigenomic and 3D genome features across cell types and linking them to disease-associated genetic risk.

bioRxiv · Jun 23, 2026 · PreprintNeuroscience

Single-cell Multiome Analysis of Chromatin State and Transcriptome in the Human Basal Ganglia

Lei Chang, Kai Li, Yang Xie, Guojie Zhong, Jonathan A. Rink, Cindy Tatiana Báez-Becerra, Anita Lie, Hannah S. Indralingam, Keyi Dong, Timothy H. Loe, Zhaoning Wang, Songpeng Zu, Joseph Colin Kern, Zoey Zhao, Eric Boone, , Bing Ren

This paper presents a single-cell multiome atlas of the human basal ganglia, linking chromatin states and transcriptomes to cell-type identity and disease-associated variants.

bioRxiv · Feb 4, 2026 · PreprintGenomics

Single-Cell Atlas of Transcription and Chromatin States Reveals Regulatory Programs in the Human Brain

Yang Xie, Lei Chang, Guojie Zhong, Jonathan A. Rink, Tatiana Baez-Becerra, Ethan J. Armand, Wubin Ding, Kai Li, Éric Bonne, Anita Lie, Hannah S. Indralingam, Keyi Dong, Timothy H. Loe, Bohan Huang, Zhaoning Wang, , Bing Ren

The paper creates a single-cell atlas of transcription and chromatin states in the human brain, identifying regulatory programs and linking them to neuropsychiatric disorders.

bioRxiv · Feb 3, 2026 · PreprintGenomics