Author

D. Jacob Machado

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:phylogenetics / evolution· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. de Bernardi Schneider· 1 shared D. A. Janies· 1 shared S. Castroviejo-Fisher· 1 shared T. Grant· 1 shared

Activity by Year

2019-2019 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 2 mutual co-author links

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1 shared paperEvolutionary Biology

A. de Bernardi Schneider

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2 papers

Recent·Most cited

Evidence of Absence Treated as Absence of Evidence: The Effects of Variation in the Number and Distribution of Gaps Treated as Missing Data on the Results of Standard Maximum Likelihood Analysis

D. Jacob Machado, S. Castroviejo-Fisher, T. Grant

The paper evaluates how variation in gap numbers and distributions affects maximum likelihood analysis results, finding negative correlations between ML scores and gap opening costs and missing data.

bioRxiv · Sep 5, 2019Evolutionary Biology

Enhanced genome annotation strategy provides novel insights on the phylogeny of Flaviviridae

A. de Bernardi Schneider, D. Jacob Machado, D. A. Janies

The paper develops a genome annotation pipeline for Flaviviridae, improving phylogenetic analysis and reclassifying divergent viruses.

bioRxiv · Jun 18, 2019Evolutionary Biology