D. Wulf

Comparative analysis of gene regulatory networks identifies conserved regulators in seed plants

The paper compares gene regulatory networks across seed plants and an alga, finding conserved regulators of photosynthesis and differences in regulatory mechanisms between species.

Multiple transcription factors mediate acclimation of Chlamydomonas to light stress

The paper identifies eight transcription factors involved in light stress acclimation in Chlamydomonas by analyzing a large RNA-seq dataset and validating their roles in photoprotection.

Transcription factors mediating regulation of photosynthesis

The paper identifies and validates transcription factors regulating photosynthesis using machine learning and finds they operate in a non-hierarchical, interlooped network.

Local DNA shape is a general principle of transcription factor binding specificity in Arabidopsis thaliana

This paper uses DNA shape features to improve transcription factor binding prediction in Arabidopsis thaliana, showing that DNA shape enhances prediction beyond sequence alone.

Ubiquitin ligase component LRS1 and transcription factor CrHy5 act as a light switch for photoprotection in Chlamydomonas

The paper identifies LRS1 and CrHY5 as regulators of photoprotection gene expression in Chlamydomonas under high light conditions.