Author

Derek Benson

Commonwealth Scientific and Industrial Research Organisation

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Research Focus:differential expression· 1 Organism:E. coli· 1 Approach:machine learning (classical)· 1 Assay:metabolomics· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Alan J. RobertsoniD· 1 shared Andrew C. WardeniD· 1 shared Devika GanesamoorthyiD· 1 shared James Watts· 1 shared John V. PearsoniD· 1 shared Juan Pablo Molina OrtiziD· 1 shared Kaltin FergusoniD· 1 shared Kátia NonesiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Alan J. RobertsonORCID

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2 papers

Recent·Most cited

EMMAi: fast enzyme-allocation constraints in GEMs for improved biomass prediction across carbon sources

Juan Pablo Molina Ortiz, Derek Benson, James Watts, Mariana Velasque, Andrew C. Warden, Matthew J. Morgan

EMMAi automates enzyme constraint integration into GEMs using AI-predicted kcat values, improving biomass prediction accuracy across carbon sources without manual curation.

bioRxiv · May 1, 2025 · PreprintSystems Biology

Profiling copy number alterations in cell-free tumour DNA using a single-reference

Alan J. Robertson, Qinying Xu, Sarah Song, Devika Ganesamoorthy, Derek Benson, Wenhan Chen, Kaltin Ferguson, Kátia Nones, Sunil R. Lakhani, Peter T. Simpson, Nicola Waddell, John V. Pearson, Lachlan Coin

This paper introduces qCNV and sCNA-seq tools to profile somatic copy number alterations in cell-free DNA without a reference panel, showing effectiveness in detecting clinically relevant mutations from plasma samples.

bioRxiv · Mar 28, 2018 · PreprintBioinformatics