Author

Dickson Chung

University of California, Santa Cruz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Research Focus:software / tool· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Adam M. NovakiD· 2 shared Benedict PateniD· 2 shared Giuseppe NarzisiiD· 2 shared André CorveloiD· 1 shared Benjamin Levine· 1 shared Bryan Zhu· 1 shared Daniel Tapias-GomeziD· 1 shared Erik P. GarrisoniD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersBioinformatics

Adam M. NovakORCID

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Author profile →

3 papers

Recent·Most cited

Lancet2: Improved and accelerated somatic variant calling with joint multi-sample local assembly graph

Rajeeva Musunuri, Bryan Zhu, Wayne E. Clarke, William F. Hooper, Timothy R. Chu, Jennifer Marie Shelton, André Corvelo, Dickson Chung, Shreya Sundar, Adam M. Novak, Benedict Paten, Michael C. Zody, Nicolas Robine, Giuseppe Narzisi

Lancet2 improves somatic variant calling with faster runtime and better performance, especially for InDels, using enhanced methods and machine learning.

NAR Genomics and Bioinformatics · Mar 25, 2026Peer-reviewedBioinformatics

Reference Sequence Browser: An R application with a User-Friendly GUI to rapidly query sequence databases

Sriram Ramesh, Samuel Rapp, Jorge Tapias Gomez, Benjamin Levine, Daniel Tapias-Gomez, Dickson Chung, Zia Truong

The paper introduces an R-based GUI tool called Reference Sequence Browser to efficiently query multiple genetic databases for reference sequences in eDNA studies.

PLoS ONE · Oct 31, 2024Peer-reviewedBioinformatics

Efficient indexing and querying of annotations in a pangenome graph

Adam M. Novak, Dickson Chung, Glenn Hickey, Sarah Djebali, Toshiyuki Yokoyama, Erik P. Garrison, Giuseppe Narzisi, Benedict Paten, Jean Monlong

The paper introduces tools to efficiently index and query annotations in pangenome graphs using GAF format, demonstrating applications on human pangenome data.

bioRxiv · Oct 12, 2024 · PreprintBioinformatics