Author

Dylan Allen

University of Illinois Urbana-Champaign

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:fluorescence / live-cell microscopy· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Alyssa Arsenault· 1 shared Andrew D. B. LeakeyiD· 1 shared Anna Hale· 1 shared Argyrios TzouvelekisiD· 1 shared Blake Long· 1 shared Bochra TourkiiD· 1 shared Brenda M. Juan-Guardela· 1 shared Carole Y. PerrotiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Alyssa Arsenault

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

PhenoStream: A Cyberinfrastructure for Automated and AI-Based Crop Trait Extraction from Aerial Imagery

Sebastián Varela, Jeremy Ruhter, Erik J. Sacks, Xuying Zheng, Dylan Allen, Anna Hale, Cory Landry, Xianyan Kuang, Blake Long, Ernst Cebert, Yan Zhu, Shatabdi Deb Proma, Sehijpreet Kaur, Diego Jarquín, Jesse I. Morrison, Andrew D. B. Leakey

PhenoStream automates crop trait extraction from aerial imagery, enabling high-throughput phenotyping with reduced latency and manual effort.

bioRxiv · Aug 30, 2026 · PreprintPlant Biology

A 50-gene high-risk profile predictive of COVID-19 and Idiopathic Pulmonary Fibrosis mortality originates from a molecular imbalance in monocyte and T-cell subsets that reverses in survivors with post-COVID-19 Interstitial Lung Disease

Bochra Tourki, Minxue Jia, Τheodoros Karampitsakos, Iset Vera, Alyssa Arsenault, Krystin Marlin, Carole Y. Perrot, Dylan Allen, Forouzandeh Farsaei, David Rutenberg, Debabrata Bandyopadhyay, Ricardo Restrepo, Muhammad R. Qureshi, K. Patel, Argyrios Tzouvelekis, , Jose D. Herazo‐Maya

The paper identifies a 50-gene high-risk profile predictive of mortality in COVID-19 and IPF, linked to monocyte and T-cell subset imbalances that reverse in post-COVID-19-ILD survivors.

bioRxiv · Oct 22, 2023 · PreprintGenomics