Author

E. B. Caffrey

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:database / resource· 1 Research Focus:ecology & biodiversity· 1 Organism:human· 1 Assay:metabolomics· 1 Assay:metagenomics· 1 Organism:mouse· 1

Frequent Co-Authors

J. L. Sonnenburg· 2 shared M. R. Olm· 2 shared A. M. Spormann· 1 shared A. S. Bhatt· 1 shared C. I. Kothe· 1 shared C. J. Severyn· 1 shared C. M. Mechler· 1 shared E. R. Gerrick· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersMicrobiology

J. L. Sonnenburg

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Author profile →

2 papers

Recent·Most cited

MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics

E. B. Caffrey, M. R. Olm, C. I. Kothe, J. Evans, J. L. Sonnenburg

MiFoDB is a metagenomics workflow that identifies microbes in fermented foods with high taxonomic resolution, enabling strain tracking and functional analysis.

bioRxiv · Mar 29, 2024 · PreprintMicrobiology

Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition

E. R. Gerrick, S. Zlitni, P. T. West, M. M. Carter, C. M. Mechler, M. R. Olm, E. B. Caffrey, J. A. Li, S. K. Higginbottom, C. J. Severyn, F. Kracke, A. M. Spormann, J. L. Sonnenburg, A. S. Bhatt, M. R. Howitt

The paper identifies metabolic diversity in commensal protists and shows how it influences intestinal immunity and trans-kingdom competition with bacteria.

bioRxiv · Aug 26, 2022Microbiology