Author

Emilie Falconnet

University of Geneva

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Cancer Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 4 Organism:human· 4 Assay:scRNA-seq· 3 Approach:statistical model· 3 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Christelle BoreliD· 4 shared Pascale RibauxiD· 4 shared Stylianos E. AntonarakisiD· 4 shared Federico Andrea SantoniiD· 2 shared Georgios Stamoulis· 2 shared Marco Garieri· 2 shared Alexandre ReymondiD· 1 shared Ambra Sartori· 1 shared

Activity by Year

2017-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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4 shared papersGenomics

Christelle BorelORCID

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Author profile →

4 papers

Recent·Most cited

Intra- and inter-chromosomal chromatin interactions mediate genetic effects on regulatory networks

Olivier Delaneau, Marianna Zazhytska, Christelle Borel, Giuliana Giannuzzi, Guillaume Rey, C. Howald, Sunil Kumar, Halit Ongen, Konstantin Yu. Popadin, Daniel Marbach, Giovanna Ambrosini, Deborah Bielser, David L. Hacker, L. Romano, Pascale Ribaux, , Emmanouil T. Dermitzakis

The paper combines regulatory element activity, gene expression, and genetic variation data across cell types to show how chromatin structure influences regulatory networks and genetic effects.

Science · May 2, 2019Peer-reviewedGenomics

Extensive cellular heterogeneity of X inactivation revealed by single-cell allele-specific expression in human fibroblasts.

Marco Garieri, Georgios Stamoulis, Xavier Blanc, Emilie Falconnet, Pascale Ribaux, Christelle Borel, Federico Andrea Santoni, Stylianos E. Antonarakis

The paper uses single-cell allele-specific expression to identify novel XCI escapees and reveals cellular heterogeneity in XCI driven by XIST.

Proceedings of the National Academy of Sciences · Dec 3, 2018Peer-reviewedGenetics

Time and space dimensions of gene dosage imbalance of aneuploidies revealed by single cell transcriptomes.

Georgios Stamoulis, Marco Garieri, Periklis Makrythanasis, Audrey Letourneau, Michel Guipponi, Nikolaos I. Panousis, Frederique Sloan Bena, Emilie Falconnet, Pascale Ribaux, Christelle Borel, Federico Andrea Santoni, Stylianos E. Antonarakis

The paper uses single-cell transcriptomes to analyze gene dosage imbalance in aneuploidies, revealing both temporal and spatial dimensions of gene expression changes in trisomies.

bioRxiv · Sep 23, 2018 · PreprintGenomics

Improving Leukemic CD34+/CD38- Blasts Characterization With Single-Cell Transcriptome Sequencing

Ambra Sartori, Phil Cheng, Emilie Falconnet, Pascale Ribaux, Jean-Pierre Aubry-Lachainaye, Mitchell P. Levesque, Stylianos E. Antonarakis, Thomas Matthes, Christelle Borel

The paper uses single-cell RNA sequencing to analyze leukemic CD34+/CD38- blasts from AML patients, identifying transcriptomic features of self-renewal, mutation effects, and prognostic gene signatures.

bioRxiv · May 31, 2017 · PreprintCancer Biology