Author

Emre Ulgac

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

Lukas WeideneriD· 2 shared Marko Brkić· 2 shared Mihailo Jovanović· 2 shared Aaakaash Meduri· 1 shared Aakaash Meduri· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 9 mutual co-author links

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2 shared papersBioinformatics

Lukas WeidenerORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

VCBench: A Multi-Dimensional Benchmark for Single-Cell Foundation Models

Lukas Weidener, Marko Brkić, Mihailo Jovanović, Emre Ulgac, Aakaash Meduri

VCBench evaluates single-cell foundation models across seven dimensions, finding baselines often outperform models, with TranscriptFormer showing unique strengths but tradeoffs.

bioRxiv · Jun 23, 2026 · PreprintBioinformatics

CardioSafe: Multi-task prediction of cardiac ion channel activity with reverse-leak audited benchmarking

Mihailo Jovanović, Lukas Weidener, Marko Brkić, Emre Ulgac, Aaakaash Meduri

CardioSafe predicts blocker activity for cardiac ion channels using a multi-task neural network and identifies test-set contamination in existing benchmarks.

bioRxiv · May 12, 2026 · PreprintBioinformatics