Author

Evan T. Davis

University at Albany, State University of New York

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:human· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Chetna MathuriD· 3 shared Peter C. DedoniD· 3 shared Thomas J. BegleyiD· 3 shared Dylan J. EhrbariD· 2 shared Humphrey Chukwudi OmeogaiD· 2 shared Shane R. ByrneiD· 2 shared Ulrike BegleyiD· 2 shared Agnieszka DziergowskaiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersCancer Biology

Chetna MathurORCID

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Author profile →

3 papers

Recent·Most cited

Oncogenes have the most distinct codon biases in the genome and codon signatures that oppose tumor suppressor genes

Chetna Mathur, Evan T. Davis, Dylan J. Ehrbar, Humphrey Chukwudi Omeoga, Lauren Endres, Shane R. Byrne, Ulrike Begley, Peter C. Dedon, Thomas J. Begley

The paper compares codon usage bias between oncogenes and tumor suppressor genes in humans and mice, finding distinct patterns in humans and less distinct in mice.

bioRxiv · Aug 24, 2026 · PreprintCancer Biology

The Wobble Uridine tRNA Writer MnmA Shapes Codon-Dependent Stress Response Systems

Humphrey Chukwudi Omeoga, Dylan J. Ehrbar, Chetna Mathur, Cady Roselli, Katherine Urner, Evan T. Davis, Rizwan Ahmad, Agnieszka Dziergowska, Qishan Lin, Peter C. Dedon, Jia Sheng, Thomas J. Begley

This study identifies MnmA as a key enzyme that regulates codon-dependent stress response systems in E. coli by affecting tRNA modifications and gene expression.

bioRxiv · Aug 19, 2026 · PreprintMolecular Biology

Genes and Pathways Comprising the Human and Mouse ORFeomes Display Distinct Codon Bias Signatures that Can Regulate Protein Levels

Evan T. Davis, Rahul Raman, Shane R. Byrne, Farzan Ghanegolmohammadi, Chetna Mathur, Ulrike Begley, Peter C. Dedon, Thomas J. Begley

The paper analyzes codon bias in human and mouse ORFeomes to identify species-specific pathways regulated by translation, showing that extreme codon bias affects protein levels in transcription factors.

bioRxiv · Feb 3, 2025 · PreprintGenomics