F. Almeida-Silva

The Soybean Expression Atlas v2: a comprehensive database of over 5000 RNA-seq samples

The Soybean Expression Atlas v2 expands its dataset to 5481 RNA-seq samples, offering improved tools for gene expression analysis and visualization.

Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms

The paper examines how whole-genome duplications (WGDs) and small-scale duplications (SSD) influence gene regulatory networks (GRNs) in angiosperms by analyzing network motifs and their association with functional categories.

Discovering and prioritizing candidate resistance genes against soybean pests by integrating GWAS and gene coexpression networks

This study identifies candidate resistance genes against soybean pests by integrating GWAS and gene coexpression networks, finding overlaps between insect species but not nematodes.

Integration of genome-wide association studies and gene coexpression networks unveils promising soybean resistance genes against five common fungal pathogens

This study integrates GWAS and transcriptomic data to identify soybean resistance genes against five fungal pathogens and provides tools for further research.

Integrating omics approaches to discover and prioritize candidate genes involved in oil biosynthesis in soybean

The paper integrates omics data to identify candidate genes involved in oil biosynthesis in soybean, highlighting key genes and transcription factors, and suggests breeding priorities.

Pathogenesis-related protein 1 (PR-1) genes in soybean: genome-wide identification, structural analysis and expression profiling under multiple biotic and abiotic stresses

The paper identifies and characterizes 24 GmPR-1 genes in soybean, showing their stress responsiveness and potential for biotechnological applications.

Exploring the complexity of soybean (Glycine max) transcriptional regulation using global gene co-expression networks

This study constructs a soybean gene co-expression network to identify tissue-specific modules and hub genes, revealing insights into transcriptional regulation and functional divergence.

Systematic analysis of 1,298 RNA-Seq samples and construction of a comprehensive soybean (Glycine max) expression atlas

The paper systematically analyzes 1,298 soybean RNA-seq samples to construct a comprehensive expression atlas, identifying housekeeping genes and novel splicing isoforms.