T. M. Venancio

The Soybean Expression Atlas v2: a comprehensive database of over 5000 RNA-seq samples

The Soybean Expression Atlas v2 expands its dataset to 5481 RNA-seq samples, offering improved tools for gene expression analysis and visualization.

Comparative genomics and phylogenomics of Campylobacter unveil potential novel species and provide insights into niche segregation

This study uses comparative genomics and phylogenomics to analyze Campylobacter genomes, identifying potential new species and exploring correlations between pangenome metrics and niche adaptation.

Discovering and prioritizing candidate resistance genes against soybean pests by integrating GWAS and gene coexpression networks

This study identifies candidate resistance genes against soybean pests by integrating GWAS and gene coexpression networks, finding overlaps between insect species but not nematodes.

Integration of genome-wide association studies and gene coexpression networks unveils promising soybean resistance genes against five common fungal pathogens

This study integrates GWAS and transcriptomic data to identify soybean resistance genes against five fungal pathogens and provides tools for further research.

Network analysis of ten thousand genomes shed light on Pseudomonas diversity and classification

The paper analyzes 10,035 Pseudomonas genomes to estimate species diversity, identifies misclassified genomes, and proposes new taxonomic groups.

Genome sequencing of the vermicompost strain Stenotrophomonas maltophilia UENF-4GII and population structure analysis of the S. maltophilia Sm3 genogroup

The paper sequences the genome of S. maltophilia UENF-4GII and analyzes Smc genomes to identify genes associated with resistance, virulence, and population structure.

Integrating omics approaches to discover and prioritize candidate genes involved in oil biosynthesis in soybean

The paper integrates omics data to identify candidate genes involved in oil biosynthesis in soybean, highlighting key genes and transcription factors, and suggests breeding priorities.

Characterization of cellular, biochemical and genomic features of the diazotrophic plant growth-promoting bacterium Azospirillum sp. UENF-412522, a novel member of the Azospirillum genus

This paper characterizes the genomic and biochemical features of Azospirillum sp. UENF-412522, identifying genes related to nitrogen fixation, phosphate solubilization, and plant growth promotion.

Pathogenesis-related protein 1 (PR-1) genes in soybean: genome-wide identification, structural analysis and expression profiling under multiple biotic and abiotic stresses

The paper identifies and characterizes 24 GmPR-1 genes in soybean, showing their stress responsiveness and potential for biotechnological applications.

Phylogenetic and population structure analyses uncover pervasive misclassification and help assessing the biosafety of Pseudomonas alloputida for biotechnological applications

The paper analyzes the population structure of Pseudomonas alloputida using genomic data and identifies clonal complexes, resistance genes, and horizontal gene transfer events relevant to its bioremediation potential.

Exploring the complexity of soybean (Glycine max) transcriptional regulation using global gene co-expression networks

This study constructs a soybean gene co-expression network to identify tissue-specific modules and hub genes, revealing insights into transcriptional regulation and functional divergence.

Systematic analysis of 1,298 RNA-Seq samples and construction of a comprehensive soybean (Glycine max) expression atlas

The paper systematically analyzes 1,298 soybean RNA-seq samples to construct a comprehensive expression atlas, identifying housekeeping genes and novel splicing isoforms.

Polyploidization events shaped the transcription factor repertoires in legumes (Fabaceae)

The paper identifies whole-genome duplication events in legumes and Glycine that shaped transcription factor repertoires, linked to traits like nitrogen fixation and seed development.

Transcriptional landscape of soybean (Glycine max) embryonic axes during germination in the presence of paclobutrazol, a gibberellin biosynthesis inhibitor

This study investigates the transcriptional changes in soybean embryonic axes during germination under GA biosynthesis inhibition, identifying hormone-related gene modulation and transcription factor down-regulation.

Genome sequencing and assessment of plant growth-promoting properties of a Serratia marcescens strain isolated from vermicompost

This study sequenced the genome of a Serratia marcescens strain isolated from vermicompost and assessed its plant growth-promoting abilities, identifying genes responsible for these traits and potential agricultural applications.

Expansion and diversification of the gibberellin receptor GIBBERELLIN INSENSITIVE DWARF1 (GID1) family in land plants

This study identifies and classifies GID1 receptors across 52 plant genomes, revealing lineage-specific expansions and functional specialization of GID1 subfamilies in response to GA levels.