Author

F. Breden

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 3 Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Research Focus:cell type annotation· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:development & morphogenesis· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

B. A. Sandkam· 3 shared I. Darolti· 3 shared J. E. Mank· 3 shared A. E. Wright· 2 shared J. Morris· 2 shared P. Almeida· 2 shared B. L. S. Furman· 1 shared D. M. Larkin· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersEvolutionary Biology

B. A. Sandkam

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Author profile →

4 papers

Recent·Most cited

Evaluating methods for B-cell clonal family assignment

K. A. Voss, K. M. Kaur, R. Banerjee, F. Breden, M. Pennell

This study evaluates methods for assigning B-cell sequences to clonal families, finding that SCOPer-H performs best but requires a reference genome, while mPTP shows promise for non-model organisms.

bioRxiv · May 29, 2024 · PreprintImmunology

GENE DUPLICATION TO THE Y CHROMOSOME IN TRINIDADIAN GUPPIES

Y. Lin, I. Darolti, B. L. S. Furman, P. Almeida, B. A. Sandkam, F. Breden, A. E. Wright, J. E. Mank

The paper identifies gene duplications to the Y chromosome in guppies, suggesting it resolves sexual conflict over survival rather than unresolved conflict.

bioRxiv · Feb 16, 2021Evolutionary Biology

Divergence and Remarkable Diversity of the Y Chromosome in Guppies

P. Almeida, B. A. Sandkam, J. Morris, I. Darolti, F. Breden, J. E. Mank

This study examines Y chromosome divergence and diversity in guppies, finding that recombination suppression occurs through gradual mechanisms rather than inversions, and that haplotype diversity is linked to female preference for rare color variations.

bioRxiv · Jul 13, 2020Evolutionary Biology

Extreme heterogeneity in sex chromosome differentiation and dosage compensation in livebearers

I. Darolti, A. E. Wright, B. A. Sandkam, J. Morris, N. I. Bloch, M. Farre, R. C. Fuller, G. R. Bourne, D. M. Larkin, F. Breden, J. E. Mank

The paper analyzes sex chromosome differentiation and dosage compensation in livebearing fish, finding extreme variation across species and a novel neo-sex chromosome in P. picta.

bioRxiv · Mar 28, 2019Evolutionary Biology