Author

F. E. Dewhirst

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5

Signature Assays, Organisms & Methods

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Organism:human· 5 Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1

Frequent Co-Authors

K. P. Lemon· 2 shared T. Chen· 2 shared Y. Huang· 2 shared A. Baryiames· 1 shared A. Kokaras· 1 shared A. Shrivastava· 1 shared C. B. Matrishin· 1 shared C. D. Johnston· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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2 shared papersMicrobiology

K. P. Lemon

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Author profile →

5 papers

Recent·Most cited

Phages are important unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis

C. B. Matrishin, E. M. Haase, F. E. Dewhirst, J. L. Mark Welch, F. Miranda-Sanchez, D. C. MacFarland, K. M. Kauffman

This study identifies phages as significant contributors to the strain-level diversity and ecology of Porphyromonas gingivalis, revealing their role in shaping bacterial physiology and interactions.

Microbiome · Jul 25, 2023Peer-reviewedMicrobiology

Fusobacterium sphaericum sp. nov., isolated from a human colon tumor, adheres to colonic epithelial cells and induces IL-8 secretion

M. A. Zepeda-Rivera, Y. Eisele, A. Baryiames, H. Wu, C. Mengoni, G. Piccinno, E. McMahon, K. D. LaCourse, D. S. Jones, H. Hauner, S. S. Minot, N. Segata, F. E. Dewhirst, C. D. Johnston, S. Bullman

The paper isolates and characterizes a novel Fusobacterium species from a human colon tumor, showing its adherence to epithelial cells and IL-8 induction.

bioRxiv · Jun 16, 2023Microbiology

Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets

I. F. Escapa, Y. Huang, T. Chen, M. Lin, A. Kokaras, F. E. Dewhirst, K. P. Lemon

The paper develops a method to construct habitat-specific training sets for species-level taxonomic assignment of 16S rRNA gene sequences, validated using human aerodigestive tract microbiota data.

Microbiome · May 15, 2020Peer-reviewedMicrobiology

New insights into human nostril microbiome from the expanded Human Oral Microbiome Database (eHOMD): a resource for species-level identification of microbiome data from the aerodigestive tract

I. Fernandez Escapa, T. Chen, Y. Huang, P. Gajare, F. E. Dewhirst, K. P. Lemon

The paper expands the Human Oral Microbiome Database (eHOMD) to include nostril microbiome data, revealing key insights into species composition and function in the aerodigestive tract.

bioRxiv · Oct 31, 2018Microbiology

Cargo Transport Shapes the Spatial Organization of a Microbial Community

A. Shrivastava, V. Patel, Y. Tang, S. C. Yost, F. E. Dewhirst, H. C. Berg

The paper shows that gliding bacteria, specifically Capnocytophaga gingivalis, transport non-motile bacteria as cargo, shaping the spatial organization of polymicrobial communities.

bioRxiv · Jun 29, 2018Microbiology