A sample-to-report solution for taxonomic identification of cultured bacteria in the clinical setting based on nanopore sequencing
S. M. Neuenschwander, M. A. Terrazos Miani, H. Amlang, C. Perroulaz, P. Bittel, C. Casanova, S. Droz, J.-P. Flandrois, S. L. Leib, F. Suter-Riniker, A. Ramette
This paper develops a sample-to-report solution using nanopore sequencing and an automated pipeline to accurately identify bacterial species in clinical samples, achieving high sequence identity and resolving mixed cultures.
bioRxiv · Aug 31, 2019Microbiology