Author

J.-P. Flandrois

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1

Frequent Co-Authors

A. Luzzati· 1 shared A. Ramette· 1 shared A.-F. Myard-Dury· 1 shared B. Lafay· 1 shared C. Brochier-Armanet· 1 shared C. Casanova· 1 shared C. Chidiac· 1 shared C. Perroulaz· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperEcology

A. Luzzati

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Description of a new genus of the Pectobacteriaceae family isolated from lake water in France; Prodigiosinella aquatilis gen. nov. sp. nov. includes two subspecies Prodigiosinella aquatilis subsp. aquatilis ssp. nov. and Prodigiosinella aquatilis subsp. natabilis ssp. nov.

N. Hugouvieux- Cotte-Pattat, J.-P. Flandrois, J. Briolay, S. Reverchon, C. Brochier-Armanet

The paper describes a new genus and two subspecies of pectinolytic bacteria isolated from lake water in France, based on genomic, phylogenetic, and phenotypic analyses.

bioRxiv · Sep 17, 2023 · PreprintMicrobiology

Metapopulation ecology links antibiotic resistance, consumption and patient transfers in a network of hospital wards

J. T. Shapiro, G. Leboucher, A.-F. Myard-Dury, P. Girardo, A. Luzzati, M. Mary, J.-F. Sauzon, B. Lafay, O. Dauwalder, F. Laurent, G. Lina, C. Chidiac, S. Couray-Targe, F. Vandenesch, J.-P. Flandrois, J.-P. Rasigade

The paper uses metapopulation ecology to analyze how antibiotic use and patient transfers affect antibiotic resistance in hospital wards, finding strong links between antibiotic consumption and resistance variants.

bioRxiv · Sep 19, 2019Ecology

A sample-to-report solution for taxonomic identification of cultured bacteria in the clinical setting based on nanopore sequencing

S. M. Neuenschwander, M. A. Terrazos Miani, H. Amlang, C. Perroulaz, P. Bittel, C. Casanova, S. Droz, J.-P. Flandrois, S. L. Leib, F. Suter-Riniker, A. Ramette

This paper develops a sample-to-report solution using nanopore sequencing and an automated pipeline to accurately identify bacterial species in clinical samples, achieving high sequence identity and resolving mixed cultures.

bioRxiv · Aug 31, 2019Microbiology