MicrobiologybioRxiv
A sample-to-report solution for taxonomic identification of cultured bacteria in the clinical setting based on nanopore sequencing
S. M. Neuenschwander, M. A. Terrazos Miani, H. Amlang…·A. Ramette
This paper develops a sample-to-report solution using nanopore sequencing and an automated pipeline to accurately identify bacterial species in clinical samples, achieving high sequence identity and resolving mixed cultures.
DOI 10.1128/jcm.00060-20