benchNGS : An approach to benchmark short reads alignment tools
Farzana Rahman, Mehedi Hassan, Alona Martin Kryshchenko, Inna Dubchak, Nikolai Nickolai Alexandrov, Tatiana Tatarinova
The paper benchmarks short reads alignment tools using pre-computed global alignments of closely related genomes to assess their accuracy in handling mutations not present in the reference genome.
bioRxiv · Apr 18, 2015 · PreprintBioinformatics