Author

Inna Dubchak

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:benchmark study· 2 Research Focus:benchmarking· 2 Assay:whole-genome sequencing· 2 Organism:multiple species· 1

Frequent Co-Authors

Aaron E. Darling· 1 shared Alexander Poliakov· 1 shared Alona Martin Kryshchenko· 1 shared Benedict PateniD· 1 shared Brian Raney· 1 shared Carsten Kemena· 1 shared Cedric Notredame· 1 shared David Haussler· 1 shared

Activity by Year

2014-2015 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Aaron E. Darling

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2 papers

Recent·Most cited

benchNGS : An approach to benchmark short reads alignment tools

Farzana Rahman, Mehedi Hassan, Alona Martin Kryshchenko, Inna Dubchak, Nikolai Nickolai Alexandrov, Tatiana Tatarinova

The paper benchmarks short reads alignment tools using pre-computed global alignments of closely related genomes to assess their accuracy in handling mutations not present in the reference genome.

bioRxiv · Apr 18, 2015 · PreprintBioinformatics

Alignathon: A competitive assessment of whole genome alignment methods.

Dent Earl, Ngan K Nguyen, Glenn Hickey, Robert S. Harris, Stephen Fitzgerald, Kathryn Beal, Igor Seledtsov, Vladimir Molodtsov, Brian Raney, Hiram Clawson, Jaebum Kim, Carsten Kemena, Jia-Ming Chang, Ionas Erb, Alexander Poliakov, , Benedict Paten

The paper organizes a competitive evaluation of whole genome alignment methods using simulated and real datasets, finding significant accuracy differences between tools and performance variations across evolutionary distances.

Genome Research · Oct 1, 2014Peer-reviewedBioinformatics