Tatiana V. Tatarinova

This study shows that better software development practices for RNA-seq tools lead to more citations, as evidenced by a strong statistical association between development quality and citation counts.

Ancient DNA from 181 North Eurasian foragers traces a stable west-to-east ancestry gradient and ties Yakutia_LNBA ancestry, with Y-haplogroup N, to Uralic speakers and Seima-Turbino metallurgy.

PyLAE predicts local ancestry from whole-genome sequencing or high-density genotyping data, efficiently handling large numbers of ancestral populations.

The paper presents a comprehensive CAGE atlas of human cardiac promoters and enhancers, identifying novel regulatory elements and their association with heart morphology and pathologies.

The paper shows whole-genome modeling explains phenotypic variation in plants, with admixture proportions explaining most variation for quantitative traits but not symbiotic nitrogen fixation.

The paper annotates 26,087 oil palm genes using two pipelines, identifies intronless genes, resistance genes, and fatty acid biosynthesis genes, providing resources for genome studies and breeding.

Seqping improves gene prediction in plant genomes by using self-trained HMM models and transcriptomic data, outperforming existing methods with species-specific models.

The paper analyzes the genetic relationships of the Ket people with Siberian and North American populations, finding strong ties to Paleo-Eskimo ancestry and shared ancestry with other groups.

The paper benchmarks short reads alignment tools using pre-computed global alignments of closely related genomes to assess their accuracy in handling mutations not present in the reference genome.