G. G. Borisy

Site-specificity of streptococci in the oral microbiome

The paper investigates site-specificity of Streptococcus species in the human oral microbiome using genomic and metagenomic data, finding that closely related species occupy distinct niches despite similar environmental conditions.

Gene- and genome-centric dynamics shape the diversity of oral bacterial populations

The paper analyzes oral microbiota metagenomes to determine whether adaptation is driven by gene- or genome-centric processes, finding both occur but genome-wide selection is dominant.

Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity

The paper uses metapangenomics to analyze oral microbiome diversity, revealing habitat-specific genomic groups and highlighting limitations in cultivated organisms' representation.

Preservation of three-dimensional spatial structure in the gut microbiome

This study evaluates embedding methods for preserving three-dimensional spatial structure in mouse gut tissue for fluorescence imaging, finding that Technovit H8100 better preserves spatial organization than common media.