Author

Gopi Gugan

Western University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:simulation· 1 Organism:virus· 1

Frequent Co-Authors

Art F. Y. PooniD· 3 shared Abayomi S. OlabodeiD· 2 shared Connor Chato· 2 shared Devan G. BeckeriD· 2 shared Alexandre DefelicibusiD· 1 shared Alyssa K. OvertoniD· 1 shared Aspasia OrfanouiD· 1 shared B. Jesse ShapiroiD· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Art F. Y. PoonORCID

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Author profile →

3 papers

Recent·Most cited

Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data

Steven G. Sutcliffe, Susanne A. Kraemer, Isaac Ellmen, Jennifer J. Knapp, Alyssa K. Overton, Delaney Nash, Jozef I. Nissimov, Trevor C. Charles, David Dreifuss, Ivan Topolsky, Pelin Icer Baykal, Lara Fuhrmann, Kim Philipp Jablonski, Niko Beerenwinkel, Joshua I. Levy, , B. Jesse Shapiro

The paper evaluates nine computational tools for identifying SARS-CoV-2 lineages in wastewater sequencing data using simulated samples, finding most tools reliably detect lineages above 5% frequency.

Microbial Genomics · May 24, 2024Peer-reviewedBioinformatics

Variance in Variants: Propagating Genome Sequence Uncertainty into Phylogenetic Lineage Assignment

David Champredon, Devan G. Becker, Connor Chato, Gopi Gugan, Art F. Y. Poon

This paper demonstrates how sequencing uncertainty affects phylogenetic lineage assignment and proposes a resampling method to propagate this uncertainty using SARS-CoV-2 data.

bioRxiv · Nov 30, 2021 · PreprintBioinformatics

CoVizu: Rapid analysis and visualization of the global diversity of SARS-CoV-2 genomes

Roux-Cil Ferreira, Emmanuel Wong, Gopi Gugan, Kaitlyn E Wade, Molly Liu, Laura Muñoz Baena, Connor Chato, Bonnie Lu, Abayomi S. Olabode, Art F. Y. Poon

The paper introduces CoVizu, a tool for rapidly analyzing and visualizing large SARS-CoV-2 genome datasets, producing consensus trees and beadplot visualizations.

Virus Evolution · Nov 5, 2021Peer-reviewedBioinformatics