Author
Aalto University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
3 papers
Recent·Most cited
Alexandru Dumitrescu, Dani Korpela, Adrian M. Bebenek…·Ramnik J. Xavier
The paper develops a deep learning model to predict peptide-HLA II interactions for post-translationally modified peptides, showing accurate predictions on unseen modifications.
Mohsen Ghane, Dani Korpela, Alexandru Dumitrescu, H Lähdesmäki
PepCABO improves peptide-MHC binding optimization using contrastive alignment and Bayesian optimization in a latent space, outperforming baselines across multiple alleles.
This paper introduces an optimal transport-based method to predict single-cell transcriptional responses to novel genetic perturbations, showing competitive performance on benchmark datasets.