Changes in protonation states of in-pathway residues can alter ligand binding pathways obtained from spontaneous binding molecular dynamics simulations
H. Girame, M. Garcia-Borras, F. Feixas
This study shows that protonation states of distal residues affect ligand binding pathways in MD simulations, using trypsin-benzamidine interactions as a case study.
bioRxiv · Apr 30, 2022 · PreprintBiophysics