Author

H. P. Spaink

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:zebrafish· 2 Assay:bulk RNA-seq· 1 Assay:CRISPR screen· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. E. Budding· 1 shared A. H. Meijer· 1 shared A. Zakrzewska· 1 shared B. Wintermans· 1 shared D. A. van Bergeijk· 1 shared E. Malaga-Trillo· 1 shared G. van Wezel· 1 shared H. Augustijn· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperMicrobiology

A. E. Budding

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Comparison of robotic automated and manual injection methods in zebrafish embryos for high throughput RNA silencing using CRISPR-CasRx

J. Abugattas-Nunez Del Prado, Y. Ding, J. de Sonneville, K.-J. van der Kolk, M. A. Moreno-Mateos, E. Malaga-Trillo, H. P. Spaink

This study compares robotic and manual injection methods for CRISPR-CasRx RNA knockdown in zebrafish embryos, finding similar efficiency and phenotype rates between approaches.

bioRxiv · Jul 4, 2023 · PreprintBioengineering

Taxonomic and metabolic diversity of Actinobacteria isolated from faeces of a 28,000-year-old mammoth

D. A. van Bergeijk, H. Augustijn, S. S. Elsayed, J. Willemse, V. J. Carrion, M. Urem, L. V. Grigoreva, M. Cheprasov, S. Grigariev, B. Wintermans, A. E. Budding, H. P. Spaink, M. H. Medema, G. van Wezel

The paper isolates and characterizes Actinobacteria from a 28,000-year-old mammoth's feces, revealing phylogenetic and metabolic differences from modern strains.

bioRxiv · Dec 22, 2022 · PreprintMicrobiology

RNAseq profiling of leukocyte populations in zebrafish larvae reveals a cxcl11 chemokine gene as a marker of macrophage polarization during mycobacterial infection.

J. Rougeot, V. Torraca, A. Zakrzewska, Z. Kanwal, H. Jansen, H. P. Spaink, A. H. Meijer

The paper identifies cxcl11aa as a marker of M1 macrophage polarization in zebrafish during mycobacterial infection using RNAseq profiling of sorted immune cell populations.

bioRxiv · Feb 19, 2019Immunology