Author

Haley De Ocampo

University of California, Los Angeles

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Fangming XieiD· 2 shared Jingyi Jessica LiiD· 2 shared Roy WollmaniD· 2 shared Zachary Hemminger· 2 shared Aihui WangiD· 1 shared Dongyuan SongiD· 1 shared Gabriela Sanchez-Tam· 1 shared Hong‐Wei DongiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Fangming XieORCID

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2 papers

Recent·Most cited

Spatial Single-Cell Mapping of Transcriptional Differences Across Genetic Backgrounds in Mouse Brains

Zachary Hemminger, Gabriela Sanchez-Tam, Haley De Ocampo, Aihui Wang, Thomas J Underwood, Fangming Xie, Qiuying Zhao, Dongyuan Song, Jingyi Jessica Li, Hong‐Wei Dong, Roy Wollman

The paper introduces ATLAS, a method to map transcriptional differences across genetic backgrounds in mouse brains, revealing significant cell type distribution changes between sexes and genetic models.

Nature Methods · Oct 30, 2026Peer-reviewedGenomics

CIPHER: An end-to-end framework for designing optimized aggregated spatial transcriptomics experiments

Zachary Hemminger, Haley De Ocampo, Fangming Xie, Zhiqian Zhai, Jingyi Jessica Li, Roy Wollman

CIPHER optimizes aggregate spatial transcriptomics experiments by jointly designing gene signatures and cell embeddings, improving decoding accuracy and experimental reliability.

PLoS Computational Biology · Jun 4, 2026Peer-reviewedBioinformatics