Author
Bilkent University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
4 papers
Recent·Most cited
Helyasadat Hashemi Aghdam, Sobhan Shukueian Tabrizi, A. Ercument Cicek
RPFace predicts RNA-protein interfaces directly from sequence, outperforming existing methods on RNA interfaces and generalizing to in vivo data without pretraining.
Sobhan Shukueian Tabrizi, Helyasadat Hashemi Aghdam, A. Ercüment Çiçek
RNA-X is a foundation model for designing RNA sequences that bind to multiple targets, including proteins, RNA, and DNA, and it outperforms existing methods in binding prediction and design.
Sobhan Shukueian Tabrizi, Sina Barazandeh, Helyasadat Hashemi Aghdam, A. Ercüment Çiçek
RNAtranslator generates RNA sequences that bind to specific proteins by treating RNA design as a sequence-to-sequence translation task, producing novel and high-affinity sequences.