Author
University of Helsinki
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
5 papers
Recent·Most cited
Ilya Plyusnin, Olli P. Vapalahti, Tarja A. Sironen, Ravi Kant, Teemu Smura
This paper introduces Lazypipe2, an improved metagenomic pipeline for virus detection, showing enhanced performance in identifying eukaryotic viruses and handling divergent sequences.
Viruses · Feb 4, 2023Peer-reviewedBioinformatics
Ilya Plyusnin, Phuoc Truong Nguyen, Tarja A. Sironen, Olli P. Vapalahti, Teemu Smura, Ravi Kant
ClusTRace is a bioinformatic pipeline for analyzing clusters in SARS-CoV-2 phylogenies to detect super-spreading events and novel mutations.
BMC Bioinformatics · May 28, 2022Peer-reviewedBioinformatics
Phuoc Truong Nguyen, Ilya Plyusnin, Tarja A. Sironen, Olli P. Vapalahti, Ravi Kant, Teemu Smura
HaVoC is a bioinformatic pipeline that assembles SARS-CoV-2 sequences and identifies lineages to detect variants of concern.
BMC Bioinformatics · Jul 17, 2021Peer-reviewedBioinformatics
Ilya Plyusnin, Ravi Kant, Anne J. Johanna Jaaskelainen, Tarja A. Sironen, Liisa Holm, Olli P. Vapalahti, Teemu Smura
The paper introduces a novel NGS pipeline called LAZYPIPE for virus discovery across diverse hosts and samples, demonstrating its ability to identify both known and novel viruses.
Virus Evolution · Jul 1, 2020Peer-reviewedBioinformatics
Ilya Plyusnin, Liisa Holm, Petri Törönen
The paper compares 37 Gene Ontology evaluation metrics using Artificial Dilution Series, revealing significant performance differences and proposing improvements.
PLoS Computational Biology · Nov 4, 2019Peer-reviewedBioinformatics