Author

J. C. Braat

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Organism:E. coli· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Organism:mouse· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

R. J. L. Willems· 2 shared A. C. Schurch· 1 shared E. A. M. Majoor· 1 shared E. A. N. Oostdijk· 1 shared E. Buelow· 1 shared H. Smidt· 1 shared J. Corander· 1 shared J. R. Bayjanov· 1 shared

Activity by Year

2017-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

R. J. L. Willems

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2 papers

Recent·Most cited

mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species

S. Arredondo-Alonso, M. R. C. Rogers, J. C. Braat, T. D. Verschuuren, J. Top, J. Corander, R. J. L. Willems, A. C. Schurch

The paper introduces mlplasmids, an SVM-based tool to classify short-read WGS contigs as plasmid- or chromosome-derived in bacterial species, achieving high accuracy across three species.

bioRxiv · May 23, 2018Microbiology

Gut microbiota and resistome dynamics in intensive care patients receiving selective digestive tract decontamination

E. Buelow, T. de Jesus Bello Gonzalez, S. Fuentes, W. A. A. de Steenhuijsen Piters, L. Lahti, J. R. Bayjanov, E. A. M. Majoor, J. C. Braat, M. S. M. van Mourik, E. A. N. Oostdijk, R. J. L. Willems, M. J. M. Bonten, M. W. J. van Passel, H. Smidt, W. van Schaik

This study examines gut microbiota and resistome changes in ICU patients undergoing selective decontamination, finding reduced diversity and specific resistance gene abundance.

bioRxiv · Jan 25, 2017Microbiology