J. F. Rudzinski

Allostery in Proteins as Point-to-Point Telecommunication in a Network: Frequency Decomposed Signal-to-Noise Ratio and Channel Capacity Analysis

The paper introduces a frequency-domain framework to analyze allostery in proteins by modeling ligand-induced displacements and noise fluctuations, using signal-to-noise ratio and channel capacity analysis to identify new allosteric regions.

Investigating the conformational ensembles of intrinsically-disordered proteins with a simple physics-based model

This paper develops a physics-based model to study conformational ensembles of intrinsically disordered proteins, showing how interactions and sequence specificity affect their dynamics.

The role of conformational entropy in the determination of structural-kinetic relationships for helix-coil transitions

The paper examines structural-kinetic relationships in helix-coil transitions using molecular simulations, showing conformational entropy's role in determining kinetic properties.

Structural-Kinetic-Thermodynamic Relationships Identified from Physics-based Molecular Simulation Models

This study investigates structural-kinetic-thermodynamic relationships in a coarse-grained molecular simulation model of the helix-coil transition by varying force-field parameters.