Author

J. Huerta-Cepas

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

A. Rodriguez del Rio· 3 shared L. P. Coelho· 2 shared P. Bork· 2 shared A. Fullam· 1 shared A. Gutierrez-Preciado· 1 shared A. Hernandez-Plaza· 1 shared A. Houseman· 1 shared A. J. Roger· 1 shared

Activity by Year

2016-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMicrobiology

A. Rodriguez del Rio

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Computational exploration of the global microbiome for antibiotic discovery

C. D. Santos-Junior, M. D. T. Torres, Y. Duan, A. Rodriguez del Rio, T. S. B. Schmidt, H. Chong, A. Fullam, K. Michael, C. Zhu, A. Houseman, J. Somborski, A. Vines, X.-M. Zhao, P. Bork, J. Huerta-Cepas, , L. P. Coelho

The paper uses machine learning to predict antimicrobial peptides from microbiome data, identifies novel peptides, and validates their antibacterial activity against drug-resistant pathogens.

bioRxiv · Aug 31, 2023Microbiology

Several independent adaptations of archaea to hypersaline environments

B. A. Baker, A. Gutierrez-Preciado, A. Rodriguez del Rio, C. McCarthy, P. Lopez-Garcia, J. Huerta-Cepas, E. Susko, A. J. Roger, L. Eme, D. Moreira

This study resolves the phylogeny of extremely halophilic archaea and identifies four independent adaptations to hypersaline environments through phylogenomic analysis and gene transfer mechanisms.

bioRxiv · Jul 3, 2023 · PreprintEvolutionary Biology

Functional and evolutionary significance of unknown genes from uncultivated taxa

A. Rodriguez del Rio, J. Giner-Lamia, C. P. Cantalapiedra, J. Botas, Z. Deng, A. Hernandez-Plaza, L. Paoli, T. S. Schmidt, S. Sunagawa, P. Bork, L. P. Coelho, J. Huerta-Cepas

The paper identifies and analyzes novel protein families from uncultivated microbes, revealing their evolutionary significance and potential ecological roles.

bioRxiv · Jan 26, 2022Microbiology

A Critical Review on the Use of Support Valuesin Tree Viewers and Bioinformatics Toolkits

L. Czech, J. Huerta-Cepas, A. Stamatakis

This paper reviews issues with branch support values in phylogenetic tree viewers and toolkits, finding that 14/20 tools lack user control over node label semantics, leading to potential errors in tree re-rooting.

bioRxiv · Sep 7, 2016Evolutionary Biology