Author

L. P. Coelho

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 5 Research Focus:cell type annotation· 3 Approach:statistical model· 3 Research Focus:clustering· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Organism:bacteria (other)· 1

Frequent Co-Authors

P. Bork· 4 shared T. S. Schmidt· 3 shared A. Fullam· 2 shared A. Rodriguez del Rio· 2 shared J. Huerta-Cepas· 2 shared O. M. Maistrenko· 2 shared S. S. Li· 2 shared S. Sunagawa· 2 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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4 shared papersMicrobiology

P. Bork

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Author profile →

6 papers

Recent·Most cited

Ubiquity of inverted 'gelatinous' ecosystem pyramids in the global ocean

F. Lombard, L. Guidi, M. C. Brandao, L. P. Coelho, S. Colin, J. R. Dolan, A. Elineau, J. M. Gasol, P. L. Grondin, N. Henry, F. M. Ibarbalz, L. Jalabert, M. Loreau, S. Martini, Z. Meriguet, , G. Gorsky

The paper quantifies plankton community structure globally, revealing inverted biomass pyramids dominated by gelatinous organisms and predicting future shifts in oceanic carbon cycles.

bioRxiv · Feb 9, 2024 · PreprintEcology

Computational exploration of the global microbiome for antibiotic discovery

C. D. Santos-Junior, M. D. T. Torres, Y. Duan, A. Rodriguez del Rio, T. S. B. Schmidt, H. Chong, A. Fullam, K. Michael, C. Zhu, A. Houseman, J. Somborski, A. Vines, X.-M. Zhao, P. Bork, J. Huerta-Cepas, , L. P. Coelho

The paper uses machine learning to predict antimicrobial peptides from microbiome data, identifies novel peptides, and validates their antibacterial activity against drug-resistant pathogens.

bioRxiv · Aug 31, 2023Microbiology

ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics

R. Gschwind, S. Ugarcina Perovic, M. Weiss, M. Petitjean, J. Lao, L. P. Coelho, E. Ruppe

ResFinderFG v2.0 is a database of antibiotic resistance genes from functional metagenomics, improving resistome description by detecting ARGs not found in conventional databases.

bioRxiv · Oct 19, 2022Microbiology

Functional and evolutionary significance of unknown genes from uncultivated taxa

A. Rodriguez del Rio, J. Giner-Lamia, C. P. Cantalapiedra, J. Botas, Z. Deng, A. Hernandez-Plaza, L. Paoli, T. S. Schmidt, S. Sunagawa, P. Bork, L. P. Coelho, J. Huerta-Cepas

The paper identifies and analyzes novel protein families from uncultivated microbes, revealing their evolutionary significance and potential ecological roles.

bioRxiv · Jan 26, 2022Microbiology

Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation

T. S. Schmidt, S. S. Li, O. M. Maistrenko, W. Akkani, L. P. Coelho, S. Dolai, A. Fullam, A. Glazek, R. Hercog, H. Herrema, F. Jung, S. Kandels, A. Orakov, T. Van Rossum, V. Benes, , P. Bork

This study identifies recipient and donor microbiome factors that determine strain dynamics after FMT, independent of clinical outcomes.

bioRxiv · Sep 30, 2021Microbiology

Extensive Transmission of Microbes along the Gastrointestinal Tract

T. S. Schmidt, M. R. Hayward, L. P. Coelho, S. S. Li, P. I. Costea, A. Y. Voigt, J. Wirbel, O. M. Maistrenko, R. J. Alves, E. Bergsten, C. de Beaufort, I. Sobhani, A. Heintz-Buschart, S. Sunagawa, G. Zeller, , P. Bork

The paper shows oral microbes commonly colonize the large intestine in healthy individuals and more so in disease states like colorectal cancer and rheumatoid arthritis.

bioRxiv · Dec 28, 2018Microbiology