Author

J. J. Hughes

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Organism:mouse· 1 Research Focus:phylogenetics / evolution· 1 Organism:rat· 1 Organism:Xenopus· 1

Frequent Co-Authors

A. T. Duggan· 1 shared C. A. Emerling· 1 shared C. E. Nordgren· 1 shared F. Delsuc· 1 shared G. C. Gibb· 1 shared G. W. C. Thomas· 1 shared H. N. Poinar· 1 shared J. B. Searle· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperEvolutionary Biology

A. T. Duggan

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2 papers

Recent·Most cited

The genomic landscape, causes, and consequences of extensive phylogenomic discordance in Old World mice and rats

G. W. C. Thomas, J. J. Hughes, T. Kumon, J. S. Berv, C. E. Nordgren, M. Lampson, M. Levine, J. B. Searle, J. M. Good

This study investigates phylogenomic discordance in Old World mice and rats, finding that genetic linkage and selection influence phylogenetic patterns and that assuming a single species tree can lead to errors in detecting positive selection.

bioRxiv · Aug 28, 2023 · PreprintEvolutionary Biology

Genomic data suggest parallel dental vestigialization within the xenarthran radiation

C. A. Emerling, G. C. Gibb, M.-K. Tilak, J. J. Hughes, M. Kuch, A. T. Duggan, H. N. Poinar, M. W. Nachman, F. Delsuc

The paper uses genomic data to show that dental vestigialization in xenarthrans occurred through independent events rather than a single ancestral decay.

bioRxiv · Dec 9, 2022Evolutionary Biology